Sweave/knitr

[R/knitr] Automatic bibliography generation with biblatex in RStudio

15 Comments

Everybody is talking about making research reproducible. With the integration of knitr in RStudio, reproducible research has been made available to people who are less familiar with the Terminal. All you need is some basics in R and LaTeX and you can generate reports directly from within RStudio. With a few tweaks,  RStudio automatically generates … [Read more…]

R: Controlling size and placement (subfig) of Sweave-generated figures

4 Comments

I’ve been writing quite a bit of R code recently for my gene expression analysis. Also, I use Sweave (manual) which allows embedding R code “chunks” into TeX documents. When the code is being evaluated, the output (code, calculation results, plots, tables, etc.) will automatically integrated into the document as TeX syntax, making it an … [Read more…]